Cell Biology & Bioimaging Core
PBRC Home :: CBBC Home :: Links
Free Image Analysis Software:
- Zeiss Axiovision LE
- Zeiss LSM Image Browser
- Zeiss ZEN LE SP1 (newest confocal software)
- Leica LAS AF Lite Software link (LAS-AF-Lite_2.0.2_2038)
- Leica LAS AF Lite Software link (LAS-AF-Lite 2.63_8173 32bit)
- Leica LAS AF Lite Software link (LAS-AF-Lite 3.1.0_8587)
- Leica LAS AF Lite Software link (LAS-AF-Lite 3.2.0_9652 64bit)
- Leica LAS AF Lite Software link (LAS-AF-Lite 3.3.0_10134)
- NanoZoomer Viewer Software
- Fiji Is Just ImageJ
- Cell Profiler image analysis software
- Cell Tracker
- VisBio
- Voxx (3D rendering)
- BioImageXD
- Icy
- ilastik
- Vaa3D
List of Commonly Stocked Dyes and General Staining Prochedures
Microscopy PDFs:
- Primer on Optical Microscopy
- A guided tour into subcellular colocalization analysis in light microscopy
- Chapter 4 from Handbook of Biological Confocal Microscopy - Points, Pixels, and Gray Levels: Digitizing Image Data
- Biophotonics: The Right Filter Set Gets the Most out of a Microscope
- Measuring tubulin content in Toxoplasma gondii: A comparison of laser-scanning confocal and wide-filed fluorescence microscopy
- Calibration and Validation of Confocal Spectral Imaging Systems
- The 39 Steps: A Cautionary Tale of Quantitative 3-D Fluorescence Microscopy
- Deep tissue two-photon microscopy
- A guide to choosing fluorescent proteins
- Fluorescence microscopy
- Optical sectioning microscopy
- Statistical Evaluation of Confocal Images
- A Workingperson's Guide to Deconvolution in Light Microscopy
Microscopy Links:
- Olympus Microscopy Resource Center
- Nikon MicroscopyU
- Molecular Expressions web site
- BD Biosciences Multicolor Flow Tools Database
- Zeiss Filter Set and Objective Database
- Wright Cell Imaging Facility
- W.M. Keck Center for Cellular Imaging
- Albert Einstein College of Medicine Analytical Imaging Facility
- Life Technologies Fluorescence Spectra Viewer
Histology Links/PDFs:
- Paper Cryoembedding
- The Art of Embedding Tissue for Frozen Section. Part I: A System for Precision Face Down Cryoembedding of Tissues Using Freezing Temperature-Embedding Wells
- Pathology Innovations
Flow Cytometry Related Links:
- Life Technologies Flow Cytometry Resource Center
- FlowJo Home Page
- Purdue University Cytometry Labs Links Page
- UCLA Flow Cytometry Lab Protocols
- Altman Lab FLow Cytometry Page
ListServ Archive Search Pages:
- Histonet ListServe Archive Search
- Microscopy Society of America ListServe Search
- Confocal ListServ Archive Search
Vendor Links:
- Molecular Devices
- BD Biosciences
- Chroma Technology Corporation
- Applied Scientific Instrumentation
- Vector Labs
- myNeuroLab
- Warner Instruments
- Semrock
- Omega Optical
- Thermo Scientific
- Invitrogen - Molecular Probes
- Biostatus Limited
- Jackson ImmunoResearch
- Novus Biologicals
- MatTek Glass Bottom Dishes
- Thermo Nunc Lab-Tek Chambered Slides and Coverglass
- Ibidi
- Greiner bio-one
Software Related/Vendors: