Free Image Analysis Software:

• Zeiss Axiovision LE
• Zeiss LSM Image Browser
• Zeiss ZEN LE (newest confocal software)
• MBF ImageJ Bundle
• Cell Profiler image analysis software
• Cell Tracker
• VisBio
• Voxx (3D rendering)
• BioImageXD

List of Commonly Stocked Dyes and General Staining Prochedures

Microscopy PDFs:

• Primer on Optical Microscopy
• A guided tour into subcellular colocalization analysis in light microscopy
• Chapter 4 from Handbook of Biological Confocal Microscopy - Points, Pixels, and Gray Levels: Digitizing Image Data
• Biophotonics: The Right Filter Set Gets the Most out of a Microscope
• Measuring tubulin content in Toxoplasma gondii: A comparison of laser-scanning confocal and wide-filed fluorescence microscopy
• Calibration and Validation of Confocal Spectral Imaging Systems
• The 39 Steps: A Cautionary Tale of Quantitative 3-D Fluorescence Microscopy
• Deep tissue two-photon microscopy
• A guide to choosing fluorescent proteins
• Fluorescence microscopy
• Optical sectioning microscopy
• Statistical Evaluation of Confocal Images
• A Workingperson's Guide to Deconvolution in Light Microscopy

Microscopy Links:

• Olympus Microscopy Resource Center
• Nikon MicroscopyU
• Molecular Expressions web site
• BD Biosciences Fluorescence Spectrum Viewer
• Zeiss Filter Set and Objective Database
• Wright Cell Imaging Facility
• Northwestern University Cell Imaging Facility
• W.M. Keck Center for Cellular Imaging
• Analytical Imaging Facility Multi Labeling Tips
• Michael Hooker Microscopy Facility
• Invitrogen - Fluorescence Spectra Viewer

Histology Links/PDFs:

• Paper Cryoembedding
• The Art of Embedding Tissue for Frozen Section. Part I: A System for Precision Face Down Cryoembedding of Tissues Using Freezing Temperature-Embedding Wells
• Pathology Innovations
• Richard-Allan Scientific

Flow Cytometry Related Links:

• Practical Flow Cytometry
• FlowJo Home Page
• Purdue University Cytometry Labs Links Page
• UCLA Flow Cytometry Lab Protocols
• Altman Lab FLow Cytometry Page

ListServ Archive Search Pages:

• Histonet ListServe Archive Search
• Microscopy Society of America ListServe Search
• Confocal ListServ Archive Search
• PUCL ListServ Archive Search (flow cytometry)

Vendor Links:

• Molecular Devices
• BD Biosciences
• NUNC
• Chroma Technology Corporation
• Applied Scientific Instrumentation
• Vector Labs
• myNeuroLab
• Warner Instruments
• Semrock
• Omega Optical
• Thermo Scientific
• Invitrogen - Molecular Probes
• Biostatus Limited
• Jackson ImmunoResearch

Software Related/Vendors:

• Bitplane AG (makers of Imaris software)
• SVI-wiki on 3D microscopy, deconvolution, visualization and analysis
• Intelligent Imaging Innovations (Slidebook Software)
• Molecular Devices : MetaMorph
• CellProfiler cell image analysis software
• McMaster Biophophotonics Facility ImageJ Bundle